Transmembrane Region Predictions

Intro

Here is Transmembrane Helix Prediction Benchmark. A wiki page about transmembrane protein prediction servers.

Servers

Phobius

All 26 proteins ( results , results short , )

MINNOU

All 26 proteins from alignment Sec.str (1-900) CBS is cut out, Sec.str (600-700) where pH sensor is , Sec.str , SA and RLA ,
  1. clcn2_human ( from email , polyview )

TMPRED

  1. clcn2_human ( results )

TMHMM

  1. clcn2_human ( results )

DAS

  1. clcn2_human ( results )

HMMTOP

  1. clcn2_human ( results )

MEMSAT

  1. clcn2_human ( results )

PRED_TMR

  1. clcn2_human ( results )

PSIPRED

Choose prediction method MEMSAT3 instead of secondary structure predictions.
  1. clcn2_human ( results from email )

SOSUI

If you go to the website, it generates nice 2D packing of residues.
  1. clcn2_human ( results )

TMAP

  1. clcn2_human ( results )

TopPred

  1. clcn2_human ( results )

TSEG

  1. clcn2_human ( results )

SVMtm

  1. clcn2_human ( results )